ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ks9C1 - ECOD Domain | ECOD

ECOD/Domains/e5ks9C1

e5ks9C1

UID: 001887073

PDB

Range: C:82-180
PDB: 5KS9 chain C(all domains)

Molecule: HLA class II histocompatibility antigen, DQ alpha 1 chain

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 5KS9 RCSB PDB: 5KS9 PDBe: 5KS9

Downloads

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