ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dujA1 - ECOD Domain | ECOD

ECOD/Domains/e5dujA1

e5dujA1

UID: 001887670

PDB

Range: A:251-407
PDB: 5DUJ chain A(all domains)
UniProt: O53223 (all domains)
Gene: ldtB

Molecule: L,D-transpeptidase 2

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
(2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acidDGF

+ 1 additive (Sulfate ion)

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 5DUJ RCSB PDB: 5DUJ PDBe: 5DUJ UniProt: O53223

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.