ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k6xB4 - ECOD Domain | ECOD

ECOD/Domains/e5k6xB4

e5k6xB4

UID: 001887939

PDB

Range: B:90-188
PDB: 5K6X chain B(all domains)
UniProt: Q6V4S5 (all domains)
Gene: Sdk2

Molecule: Protein sidekick-2

3D Structure

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Related Domains

Browse other domains in I-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyI-set(11.1.1.97)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462within 5 Å only

Pfam Families

Immunoglobulin I-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 5K6X RCSB PDB: 5K6X PDBe: 5K6X UniProt: Q6V4S5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.