ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l2fD2 - ECOD Domain | ECOD

ECOD/Domains/e5l2fD2

e5l2fD2

UID: 001888027

PDB

Range: D:76-172
PDB: 5L2F chain D(all domains)
UniProt: Q5QT35 (all domains)
Gene: oxa-51

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

(4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid4J6

+ 2 additives (Acetate, Glycerol)

AcetateACT
DrugBank DB14511

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5L2F RCSB PDB: 5L2F PDBe: 5L2F UniProt: Q5QT35

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerol

Shown in the structure viewer. Drug annotations from DrugDomain.