ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5svaC1 - ECOD Domain | ECOD

ECOD/Domains/e5svaC1

e5svaC1

UID: 001888074

PDB

Range: C:38-172
PDB: 5SVA chain C(all domains)
UniProt: P16370 (all domains)
Gene: RPB3

Molecule: DNA-directed RNA polymerase II subunit RPB3

3D Structure

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Related Domains

Browse other domains in RNA_pol_A_bac →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRibosomal protein TL5/L25 C-terminal domain-like(240)

HH-groupInsert subdomain of RNA polymerase alpha subunit(240.2)

TT-groupInsert subdomain of RNA polymerase alpha subunit(240.2.1)

FFamilyRNA_pol_A_bac(240.2.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01000RNA_pol_A_bac

RNA polymerase Rpb3/RpoA insert domain

External Links

ECOD PDB View: 5SVA RCSB PDB: 5SVA PDBe: 5SVA UniProt: P16370

Downloads

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