ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5t8kA1 - ECOD Domain | ECOD

ECOD/Domains/e5t8kA1

e5t8kA1

UID: 001888167

PDB

Range: A:3-243,A:409-495
PDB: 5T8K chain A(all domains)
UniProt: Q5CPH1 (all domains)
Gene: cgd3_80

Molecule: Adenosylhomocysteinase

3D Structure

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Related Domains

Browse other domains in AdoHcyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFormate/glycerate dehydrogenase catalytic domain-like(2003.1.11)

FFamilyAdoHcyase(2003.1.11.3)

Ligands

in contact, ≤ 4 Å

AdenineADE
drugDrugBank DB00173
NadideNAD
drugDrugBank DB14128
Sodium ion

Pfam Families

PF05221AdoHcyase

S-adenosyl-L-homocysteine hydrolase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5T8K RCSB PDB: 5T8K PDBe: 5T8K UniProt: Q5CPH1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Hexaethylene glycolP6G

+ 2 additives (Glycerin, Tromethamine)

GlycerinGOL
DrugBank DB09462
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.