ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5t8sB1 - ECOD Domain | ECOD

ECOD/Domains/e5t8sB1

e5t8sB1

UID: 001888178

PDB

Range: B:237-389
PDB: 5T8S chain B(all domains)
UniProt: Q5FAC0 (all domains)
Gene: metK

Molecule: S-adenosylmethionine synthase

3D Structure

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Related Domains

Browse other domains in S-AdoMet_synt_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupS-adenosylmethionine synthetase(327.17)

TT-groupS-adenosylmethionine synthetase(327.17.1)

FFamilyS-AdoMet_synt_C(327.17.1.4)

Ligands

in contact, ≤ 4 Å

Triphosphoric acid3PO
drugDrugBank DB03896
Adenosine phosphateAMP
drugDrugBank DB00131

Pfam Families

PF02773S-AdoMet_synt_C

S-adenosylmethionine synthetase, C-terminal domain

External Links

ECOD PDB View: 5T8S RCSB PDB: 5T8S PDBe: 5T8S UniProt: Q5FAC0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Ademetionine

drugDrugBank DB00118

Magnesium ionMG

metal

PYROPHOSPHATE 2-POP

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.