ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k2zC1 - ECOD Domain | ECOD

ECOD/Domains/e5k2zC1

e5k2zC1

UID: 001888900

PDB

Range: C:22-297
PDB: 5K2Z chain C(all domains)
UniProt: Q8L940 (all domains)
Gene: PDX13

Molecule: Pyridoxal 5'-phosphate synthase subunit PDX1.3

3D Structure

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Related Domains

Browse other domains in SOR_SNZ,ThiG →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilySOR_SNZ,ThiG(2002.1.1.72)

Ligands

in contact, ≤ 4 Å

2-azanylpenta-1,4-dien-3-one6R3

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Pfam Families

PF01680SOR_SNZ

SOR/SNZ family

ClanCL0036TIM_barrel

Thiazole biosynthesis protein ThiG

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5K2Z RCSB PDB: 5K2Z PDBe: 5K2Z UniProt: Q8L940

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.