ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kn0B3 - ECOD Domain | ECOD

ECOD/Domains/e5kn0B3

e5kn0B3

UID: 001888941

PDB

Range: B:229-348
PDB: 5KN0 chain B(all domains)
UniProt: Q05JF3 (all domains)
Gene: CASQ1

Molecule: Calsequestrin

3D Structure

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Related Domains

Browse other domains in Calsequestrin →

Classification

AArchitecturea+b three layers(a.12)

XX-groupThioredoxin-like(2485)

HH-groupThioredoxin-like(2485.1)

TT-groupThioredoxin-like(2485.1.1)

FFamilyCalsequestrin(2485.1.1.8)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Calcium ionCA
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF01216Calsequestrin

Calsequestrin

ClanCL0172Thioredoxin

External Links

ECOD PDB View: 5KN0 RCSB PDB: 5KN0 PDBe: 5KN0 UniProt: Q05JF3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.