ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lt6A1 - ECOD Domain | ECOD

ECOD/Domains/e5lt6A1

e5lt6A1

UID: 001889304

PDB

Range: A:1446-1507,A:1548-1690
PDB: 5LT6 chain A(all domains)
UniProt: Q9BYW2 (all domains)
Gene: SETD2

Molecule: Histone-lysine N-methyltransferase SETD2

3D Structure

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Related Domains

Browse other domains in SET →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilySET(70.3.1.1)

Ligands

in contact, ≤ 4 Å

[(2~{S},5~{S})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-pentyl-azanium76J
Thiocyanate ionSCN
Zinc ionZN

Pfam Families

SET domain

ClanCL0489SAF

External Links

ECOD PDB View: 5LT6 RCSB PDB: 5LT6 PDBe: 5LT6 UniProt: Q9BYW2

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.