ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5knkB1 - ECOD Domain | ECOD

ECOD/Domains/e5knkB1

e5knkB1

UID: 001890022

RepresentativePDB

Range: B:4-327
PDB: 5KNK chain B(all domains)
UniProt: S3TFW2 (all domains)

Molecule: Lipid A biosynthesis lauroyl acyltransferase

3D Structure

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Related Domains

Browse other domains in Lip_A_acyltrans →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupGlycerol-3-phosphate (1)-acyltransferase(7558)

HH-groupGlycerol-3-phosphate (1)-acyltransferase(7558.1)

TT-groupGlycerol-3-phosphate (1)-acyltransferase(7558.1.1)

FFamilyLip_A_acyltrans(7558.1.1.3)

Ligands

in contact, ≤ 4 Å

Undecanoic acid11A
drugDrugBank DB16857

+ 3 additives (Glycerin, Sulfate ion, Dodecyl-beta-d-maltoside)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF03279Lip_A_acyltrans

Bacterial lipid A biosynthesis acyltransferase

ClanCL0228Acyltransferase

External Links

ECOD PDB View: 5KNK RCSB PDB: 5KNK PDBe: 5KNK UniProt: S3TFW2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.