ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2d28C3 - ECOD Domain | ECOD

ECOD/Domains/e2d28C3

e2d28C3

UID: 001891393

RepresentativePDB

Range: C:64-149
PDB: 2D28 chain C(all domains)
UniProt: P31742 (all domains)
Gene: xpsE

Molecule: type II secretion ATPase XpsE

3D Structure

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Related Domains

Browse other domains in MshEN →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupGSPII protein E N-terminal domain-like(327.8)

TT-groupGSPII protein E N-terminal domain-like(327.8.1)

FFamilyMshEN(327.8.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

MshEN domain

ClanCL0793GspE_N-like

External Links

ECOD PDB View: 2D28 RCSB PDB: 2D28 PDBe: 2D28 UniProt: P31742

Downloads

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