ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5g1rG1 - ECOD Domain | ECOD

ECOD/Domains/e5g1rG1

e5g1rG1

UID: 001891654

PDB

Range: G:5-198
PDB: 5G1R chain G(all domains)
UniProt: Q5NH47 (all domains)
Gene: clpP

Molecule: ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT

3D Structure

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Related Domains

Browse other domains in CLP_protease →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupClpP/crotonase(2486)

HH-groupClpP/crotonase(2486.1)

TT-groupClpP/crotonase(2486.1.1)

FFamilyCLP_protease(2486.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, (4r)-2-Methylpentane-2,4-Diol)

AcetateACT
DrugBank DB14511
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564within 5 Å only

Shown in the structure viewer.

Pfam Families

PF00574CLP_protease

Clp protease

ClanCL0127ClpP_crotonase

External Links

ECOD PDB View: 5G1R RCSB PDB: 5G1R PDBe: 5G1R UniProt: Q5NH47

Downloads

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Drug annotations from DrugDomain.