ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5sv3D1 - ECOD Domain | ECOD

ECOD/Domains/e5sv3D1

e5sv3D1

UID: 001892016

PDB

Range: D:5-181
PDB: 5SV3 chain D(all domains)
UniProt: P02879 (all domains)

Molecule: Ricin

3D Structure

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Related Domains

Browse other domains in RIP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRIP/Polo-box domain(292)

HH-groupRibosome inactivating proteins (RIP)(292.1)

TT-groupRibosome inactivating proteins (RIP)(292.1.1)

FFamilyRIP(292.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ribosome inactivating protein

External Links

ECOD PDB View: 5SV3 RCSB PDB: 5SV3 PDBe: 5SV3 UniProt: P02879

Downloads

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