ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5knbB1 - ECOD Domain | ECOD

ECOD/Domains/e5knbB1

e5knbB1

UID: 001893486

PDB

Range: B:445-586
PDB: 5KNB chain B(all domains)
UniProt: Q08636 (all domains)
Gene: ntpA

Molecule: V-type sodium ATPase catalytic subunit A

3D Structure

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Related Domains

Browse other domains in ATP-synt_VA_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupC-terminal domain of alpha and beta subunits of F1 ATP synthase(160)

HH-groupC-terminal domain of alpha and beta subunits of F1 ATP synthase(160.1)

TT-groupC-terminal domain of alpha and beta subunits of F1 ATP synthase(160.1.1)

FFamilyATP-synt_VA_C(160.1.1.4)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462within 5 Å only

Pfam Families

PF22919ATP-synt_VA_C

C-terminal domain of V and A type ATP synthase

External Links

ECOD PDB View: 5KNB RCSB PDB: 5KNB PDBe: 5KNB UniProt: Q08636

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.