ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5kncB1 - ECOD Domain | ECOD

ECOD/Domains/e5kncB1

e5kncB1

UID: 001893506

PDB

Range: B:436-587
PDB: 5KNC chain B(all domains)
UniProt: Q08636 (all domains)
Gene: ntpA

Molecule: V-type sodium ATPase catalytic subunit A

3D Structure

Loading viewer...

Related Domains

Browse other domains in ATP-synt_VA_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupC-terminal domain of alpha and beta subunits of F1 ATP synthase(160)

HH-groupC-terminal domain of alpha and beta subunits of F1 ATP synthase(160.1)

TT-groupC-terminal domain of alpha and beta subunits of F1 ATP synthase(160.1.1)

FFamilyATP-synt_VA_C(160.1.1.4)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF22919ATP-synt_VA_C

C-terminal domain of V and A type ATP synthase

External Links

ECOD PDB View: 5KNC RCSB PDB: 5KNC PDBe: 5KNC UniProt: Q08636

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.