ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c1lA1 - ECOD Domain | ECOD

ECOD/Domains/e2c1lA1

e2c1lA1

UID: 000189443

PDB

Range: A:1-194
PDB: 2C1L chain A(all domains)
UniProt: Q9F4C9 (all domains)
Gene: R

Molecule: RESTRICTION ENDONUCLEASE

3D Structure

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Related Domains

Browse other domains in PLDc_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyPLDc_2(300.1.1.8)

Ligands

in contact, ≤ 4 Å

meso-Tartaric acidSRT
drugDrugBank DB14756
L-tartaric acidTLA
drugDrugBank DB09459

+ 4 additives (Tromethamine, Bicarbonate ion, Glycerol, …)

Pfam Families

Cardiolipin synthase, PLD-like domain

ClanCL0479PLD

External Links

ECOD PDB View: 2C1L RCSB PDB: 2C1L PDBe: 2C1L UniProt: Q9F4C9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TromethamineTRS
DrugBank DB03754
Bicarbonate ionBCT
GlycerolGOL
2-(N-MORPHOLINO)-ETHANESULFONIC ACIDMES

Shown in the structure viewer. Drug annotations from DrugDomain.