ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2cb3A1 - ECOD Domain | ECOD

ECOD/Domains/e2cb3A1

e2cb3A1

UID: 001900615

PDB

Range: A:196-344
PDB: 2CB3 chain A(all domains)
UniProt: Q9VXN9 (all domains)
Gene: PGRP-LE

Molecule: PEPTIDOGLYCAN-RECOGNITION PROTEIN-LE

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2-ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELYL-D-ALANINEMLD
drugDrugBank DB04736

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 2CB3 RCSB PDB: 2CB3 PDBe: 2CB3 UniProt: Q9VXN9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.