ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4gekA1 - ECOD Domain | ECOD

ECOD/Domains/e4gekA1

e4gekA1

UID: 001901139

PDB

Range: A:18-247
PDB: 4GEK chain A(all domains)
UniProt: C3T5M2 (all domains)
Gene: cmoA

Molecule: tRNA (cmo5U34)-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_25(2003.1.5.81)

Ligands

in contact, ≤ 4 Å

(2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio]-2-ammoniobutanoateGEK

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF13649Methyltransf_25

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4GEK RCSB PDB: 4GEK PDBe: 4GEK UniProt: C3T5M2

Downloads

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Drug annotations from DrugDomain.