ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4gf9D1 - ECOD Domain | ECOD

ECOD/Domains/e4gf9D1

e4gf9D1

UID: 001901154

PDB

Range: D:1-171
PDB: 4GF9 chain D(all domains)
UniProt: Q9GK12 (all domains)
Gene: PGLYRP1

Molecule: Peptidoglycan recognition protein 1

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

Stearic acidSTE
drugDrugBank DB03193
(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATELP5

+ 1 additive (Glycerin)

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 4GF9 RCSB PDB: 4GF9 PDBe: 4GF9 UniProt: Q9GK12

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.