ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3m8yB2 - ECOD Domain | ECOD

ECOD/Domains/e3m8yB2

e3m8yB2

UID: 001902202

PDB

Range: B:3-107,B:225-392
PDB: 3M8Y chain B(all domains)
UniProt: Q818Z9 (all domains)
Gene: deoB

Molecule: Phosphopentomutase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Metalloenzyme →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupAlkaline phosphatase-like(7515)

HH-groupAlkaline phosphatase-like(7515.1)

TT-groupAlkaline phosphatase-like(7515.1.1)

FFamilyMetalloenzyme(7515.1.1.8)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 3 additives (Glycerin, Tromethamine, Acetate ion)

GlycerinGOL
DrugBank DB09462
Tromethamine

Pfam Families

PF01676Metalloenzyme

Metalloenzyme superfamily

ClanCL0088Alk_phosphatase

External Links

ECOD PDB View: 3M8Y RCSB PDB: 3M8Y PDBe: 3M8Y UniProt: Q818Z9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754within 5 Å only

Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.