ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m8zB2 - ECOD Domain | ECOD

ECOD/Domains/e3m8zB2

e3m8zB2

UID: 001902208

PDB

Range: B:3-107,B:225-392
PDB: 3M8Z chain B(all domains)
UniProt: Q818Z9 (all domains)
Gene: deoB

Molecule: Phosphopentomutase

3D Structure

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Related Domains

Browse other domains in Metalloenzyme →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupAlkaline phosphatase-like(7515)

HH-groupAlkaline phosphatase-like(7515.1)

TT-groupAlkaline phosphatase-like(7515.1.1)

FFamilyMetalloenzyme(7515.1.1.8)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 2 additives (Glycerin, Tromethamine)

GlycerinGOL
DrugBank DB09462
Tromethamine

Pfam Families

PF01676Metalloenzyme

Metalloenzyme superfamily

ClanCL0088Alk_phosphatase

External Links

ECOD PDB View: 3M8Z RCSB PDB: 3M8Z PDBe: 3M8Z UniProt: Q818Z9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.