ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o4kC1 - ECOD Domain | ECOD

ECOD/Domains/e3o4kC1

e3o4kC1

UID: 001902704

PDB

Range: C:1-171
PDB: 3O4K chain C(all domains)
UniProt: Q9GK12 (all domains)
Gene: PGLYRP1

Molecule: Peptidoglycan recognition protein 1

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459
(2S)-1-({3-O-[2-(acetylamino)-4-amino-2,4,6-trideoxy-beta-D-galactopyranosyl]-alpha-D-glucopyranosyl}oxy)-3-(heptanoyloxy)propan-2-yl (7Z)-pentadec-7-enoateLTC

+ 1 additive (Glycerin)

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 3O4K RCSB PDB: 3O4K PDBe: 3O4K UniProt: Q9GK12

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.