ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k2mJ1 - ECOD Domain | ECOD

ECOD/Domains/e5k2mJ1

e5k2mJ1

UID: 001905955

PDB

Range: J:83-273
PDB: 5K2M chain J(all domains)
UniProt: Q5JFW0 (all domains)
Gene: TK0278

Molecule: RimK-related lysine biosynthesis protein

3D Structure

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Related Domains

Browse other domains in RimK →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRimK(206.1.3.21)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Pfam Families

RimK-like ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 5K2M RCSB PDB: 5K2M PDBe: 5K2M UniProt: Q5JFW0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.