ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l09B1 - ECOD Domain | ECOD

ECOD/Domains/e5l09B1

e5l09B1

UID: 001914561

PDB

Range: B:5-168
PDB: 5L09 chain B(all domains)
UniProt: A1JMX7 (all domains)
Gene: yenR

Molecule: Quorum-sensing transcriptional activator

3D Structure

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Related Domains

Browse other domains in Autoind_bind →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupsensor domains(223.1)

TT-groupsensor domains(223.1.1)

FFamilyAutoind_bind(223.1.1.7)

Ligands

in contact, ≤ 4 Å

3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide482

+ 3 additives (Acetic acid, Sulfate ion, 1,2-ETHANEDIOL)

Acetic acidACY
DrugBank DB03166
Sulfate ionSO4

Pfam Families

PF03472Autoind_bind

Autoinducer binding domain

ClanCL0161GAF

External Links

ECOD PDB View: 5L09 RCSB PDB: 5L09 PDBe: 5L09 UniProt: A1JMX7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.