ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gm8B1 - ECOD Domain | ECOD

ECOD/Domains/e5gm8B1

e5gm8B1

UID: 001914627

PDB

Range: B:1-167
PDB: 5GM8 chain B(all domains)
UniProt: A0A072ZPM2 (all domains)
Gene: trmJ

Molecule: tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

SinefunginSFG
drugDrugBank DB01910

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 5GM8 RCSB PDB: 5GM8 PDBe: 5GM8 UniProt: A0A072ZPM2

Downloads

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