ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1dkiC2 - ECOD Domain | ECOD

ECOD/Domains/e1dkiC2

e1dkiC2

UID: 001915789

PDB

Range: C:113P-253
PDB: 1DKI chain C(all domains)
UniProt: P0C0J0 (all domains)
Gene: speB

Molecule: PYROGENIC EXOTOXIN B ZYMOGEN

3D Structure

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Related Domains

Browse other domains in Peptidase_C10 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C10(219.1.1.10)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01640Peptidase_C10

Peptidase C10 family

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 1DKI RCSB PDB: 1DKI PDBe: 1DKI UniProt: P0C0J0

Downloads

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