ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b34A1 - ECOD Domain | ECOD

ECOD/Domains/e5b34A1

e5b34A1

UID: 001916748

PDB

Range: A:7-230
PDB: 5B34 chain A(all domains)
UniProt: P02945 (all domains)
Gene: bop

Molecule: Bacteriorhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid4QL
DecaneD10
DodecaneD12

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 5B34 RCSB PDB: 5B34 PDBe: 5B34 UniProt: P02945

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

nonaneDD9

HeptaneHP6

N-octaneOCT

HexadecaneR16

RetinalRET

Shown in the structure viewer. Drug annotations from DrugDomain.