ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5hlkB1 - ECOD Domain | ECOD

ECOD/Domains/e5hlkB1

e5hlkB1

UID: 001916998

PDB

Range: B:2-245
PDB: 5HLK chain B(all domains)
UniProt: P04390 (all domains)
Gene: ecoRVR

Molecule: Type-2 restriction enzyme EcoRV

3D Structure

Loading viewer...

Related Domains

Browse other domains in Endonuc-EcoRV →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyEndonuc-EcoRV(2008.1.1.43)

Ligands

in contact, ≤ 4 Å

LUTETIUM (III) IONLU
metal
Sodium ionNA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF09233Endonuc-EcoRV

Restriction endonuclease EcoRV

ClanCL0236PDDEXK

External Links

ECOD PDB View: 5HLK RCSB PDB: 5HLK PDBe: 5HLK UniProt: P04390

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.