ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l5dK1 - ECOD Domain | ECOD

ECOD/Domains/e5l5dK1

e5l5dK1

UID: 001917455

PDB

Range: K:1-211
PDB: 5L5D chain K(all domains)
UniProt: P28062 (all domains)
Gene: PSMB8

Molecule: Proteasome subunit beta type-8,Proteasome subunit beta type-5

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

1,2,4-trideoxy-4-methyl-2-{[N-(morpholin-4-ylacetyl)-L-alanyl-O-methyl-L-tyrosyl]amino}-1-phenyl-D-xylitol04C
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5L5D RCSB PDB: 5L5D PDBe: 5L5D UniProt: P28062

Downloads

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