ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5eloB1 - ECOD Domain | ECOD

ECOD/Domains/e5eloB1

e5eloB1

UID: 001918657

PDB

Range: B:188-545
PDB: 5ELO chain B(all domains)
UniProt: Q5CR27 (all domains)
Gene: cgd4_2370

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123
cladosporinKRS

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 5ELO RCSB PDB: 5ELO PDBe: 5ELO UniProt: Q5CR27

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.