ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lr9A1 - ECOD Domain | ECOD

ECOD/Domains/e4lr9A1

e4lr9A1

UID: 001919800

PDB

Range: A:2-100,A:218-392
PDB: 4LR9 chain A(all domains)
UniProt: Q818Z9 (all domains)
Gene: deoB

Molecule: Phosphopentomutase

3D Structure

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Related Domains

Browse other domains in Metalloenzyme →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupAlkaline phosphatase-like(7515)

HH-groupAlkaline phosphatase-like(7515.1)

TT-groupAlkaline phosphatase-like(7515.1.1)

FFamilyMetalloenzyme(7515.1.1.8)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal
2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose1X4
within 5 Å only

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF01676Metalloenzyme

Metalloenzyme superfamily

ClanCL0088Alk_phosphatase

External Links

ECOD PDB View: 4LR9 RCSB PDB: 4LR9 PDBe: 4LR9 UniProt: Q818Z9

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.