ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4o8yB1 - ECOD Domain | ECOD

ECOD/Domains/e4o8yB1

e4o8yB1

UID: 001919866

PDB

Range: B:24-160,B:192-220
PDB: 4O8Y chain B(all domains)
UniProt: P43588 (all domains)
Gene: RPN11

Molecule: 26S proteasome regulatory subunit RPN11

3D Structure

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Related Domains

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Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyJAB(2492.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JAB1/Mov34/MPN/PAD-1 ubiquitin protease

ClanCL0366JAB

External Links

ECOD PDB View: 4O8Y RCSB PDB: 4O8Y PDBe: 4O8Y UniProt: P43588

Downloads

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