ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ep8B3 - ECOD Domain | ECOD

ECOD/Domains/e5ep8B3

e5ep8B3

UID: 001921612

PDB

Range: B:71-330
PDB: 5EP8 chain B(all domains)
UniProt: P39142 (all domains)
Gene: pdp

Molecule: Pyrimidine-nucleoside phosphorylase

3D Structure

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Related Domains

Browse other domains in Glycos_transf_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleoside phosphorylase/phosphoribosyltransferase catalytic domain(7544)

HH-groupNucleoside phosphorylase/phosphoribosyltransferase catalytic domain(7544.1)

TT-groupNucleoside phosphorylase/phosphoribosyltransferase catalytic domain(7544.1.1)

FFamilyGlycos_transf_3(7544.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00591Glycos_transf_3

Glycosyl transferase family, a/b domain

External Links

ECOD PDB View: 5EP8 RCSB PDB: 5EP8 PDBe: 5EP8 UniProt: P39142

Downloads

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