ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fm8B1 - ECOD Domain | ECOD

ECOD/Domains/e5fm8B1

e5fm8B1

UID: 001921704

PDB

Range: B:508-608
PDB: 5FM8 chain B(all domains)
UniProt: P52179 (all domains)
Gene: MYOM1

Molecule: MYOMESIN-1

3D Structure

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Related Domains

Browse other domains in fn3 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyfn3(11.1.1.2)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Fibronectin type III domain

ClanCL0159E-set

External Links

ECOD PDB View: 5FM8 RCSB PDB: 5FM8 PDBe: 5FM8 UniProt: P52179

Downloads

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