ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gjpA2 - ECOD Domain | ECOD

ECOD/Domains/e5gjpA2

e5gjpA2

UID: 001921784

PDB

Range: A:1-25,A:255-389
PDB: 5GJP chain A(all domains)
UniProt: O50657 (all domains)
Gene: ldc

Molecule: Lysine/ornithine decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

CadaverineN2P
drugDrugBank DB03854
Pyridoxal phosphatePLP
drugDrugBank DB00114
Magnesium ion

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 5GJP RCSB PDB: 5GJP PDBe: 5GJP UniProt: O50657

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 2 additives (Glycerin, Triethylene glycol)

GlycerinGOL
DrugBank DB09462
Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.