ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kaff1 - ECOD Domain | ECOD

ECOD/Domains/e5kaff1

e5kaff1

UID: 001921874

PDB

Range: f:12-45
PDB: 5KAF chain f(all domains)
UniProt: Q8DIN9 (all domains)
Gene: psbF

Molecule: Cytochrome b559 subunit beta

3D Structure

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Related Domains

Browse other domains in Cytochrom_B559 →

Classification

AArchitectureextended segments(a.20)

XX-groupCytochrome b559 subunits(5036)

HH-groupCytochrome b559 subunits(5036.1)

TT-groupCytochrome b559 subunits(5036.1.1)

FFamilyCytochrom_B559(5036.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
FerrohemeHEM
drugDrugBank DB18267
1,2-Dipalmitoyl-Phosphatidyl-Glycerole

Pfam Families

PF00283Cytochrom_B559

Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits

External Links

ECOD PDB View: 5KAF RCSB PDB: 5KAF PDBe: 5KAF UniProt: Q8DIN9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02043within 5 Å only

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Shown in the structure viewer. Drug annotations from DrugDomain.