ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kafJ1 - ECOD Domain | ECOD

ECOD/Domains/e5kafJ1

e5kafJ1

UID: 001921879

PDB

Range: J:5-40
PDB: 5KAF chain J(all domains)
UniProt: P59087 (all domains)
Gene: psbJ

Molecule: Photosystem II reaction center protein J

3D Structure

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Related Domains

Browse other domains in PsbJ →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein J, PsbJ(5031)

HH-groupPhotosystem II reaction center protein J, PsbJ(5031.1)

TT-groupPhotosystem II reaction center protein J, PsbJ(5031.1.1)

FFamilyPsbJ(5031.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426

Pfam Families

PsbJ

External Links

ECOD PDB View: 5KAF RCSB PDB: 5KAF PDBe: 5KAF UniProt: P59087

Downloads

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1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Shown in the structure viewer. Drug annotations from DrugDomain.