ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lybl81 - ECOD Domain | ECOD

ECOD/Domains/e5lybl81

e5lybl81

UID: 001922455

PDB

Range: l8:24-254
PDB: 5LYB chain l8(all domains)
UniProt: P17076 (all domains)
Gene: RPL8A

Molecule: 60S ribosomal protein L8-A,60S ribosomal protein L8-A,60S Ribosomal Protein L8

3D Structure

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Related Domains

Browse other domains in Ribosomal_L7Ae →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupL30e-like(301.1)

TT-groupL30e-like(301.1.1)

FFamilyRibosomal_L7Ae(301.1.1.1)

Ligands

in contact, ≤ 4 Å

osmium (III) hexammineOHX
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01248Ribosomal_L7Ae

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

ClanCL0101PELOTA

External Links

ECOD PDB View: 5LYB RCSB PDB: 5LYB PDBe: 5LYB UniProt: P17076

Downloads

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