ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yp1D2 - ECOD Domain | ECOD

ECOD/Domains/e2yp1D2

e2yp1D2

UID: 001923492

PDB

Range: D:130-326
PDB: 2YP1 chain D(all domains)
UniProt: B9W4V6 (all domains)
Gene: APO1

Molecule: AROMATIC PEROXYGENASE

3D Structure

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Related Domains

Browse other domains in Peroxidase_2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupEF-hand(108)

HH-groupCloroperoxidase(108.3)

TT-groupCloroperoxidase(108.3.1)

FFamilyPeroxidase_2(108.3.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

PF01328Peroxidase_2

Peroxidase, family 2

External Links

ECOD PDB View: 2YP1 RCSB PDB: 2YP1 PDBe: 2YP1 UniProt: B9W4V6

Downloads

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Magnesium ion

metalwithin 5 Å only

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.