ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j55A1 - ECOD Domain | ECOD

ECOD/Domains/e5j55A1

e5j55A1

UID: 001924020

PDB

Range: A:2-488
PDB: 5J55 chain A(all domains)
UniProt: Q2GA76 (all domains)
Gene: Saro_0802

Molecule: Carotenoid oxygenase

3D Structure

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Related Domains

Browse other domains in RPE65 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyRPE65(5.1.4.15)

Ligands

in contact, ≤ 4 Å

OxygenOXY
drugDrugBank DB09140
FE (III) IONFE
metal
4-hydroxy-3-methoxybenzaldehyde

Pfam Families

Retinal pigment epithelial membrane protein

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 5J55 RCSB PDB: 5J55 PDBe: 5J55 UniProt: Q2GA76

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Triethylene glycol)

Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.