ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jf0A1 - ECOD Domain | ECOD

ECOD/Domains/e5jf0A1

e5jf0A1

UID: 001924071

PDB

Range: A:2-204
PDB: 5JF0 chain A(all domains)
UniProt: Q8E378 (all domains)
Gene: def

Molecule: Peptide deformylase

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 5JF0 RCSB PDB: 5JF0 PDBe: 5JF0 UniProt: Q8E378

Downloads

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