ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5triA1 - ECOD Domain | ECOD

ECOD/Domains/e5triA1

e5triA1

UID: 001924318

PDB

Range: A:353-564
PDB: 5TRI chain A(all domains)
UniProt: Q9WMX2 (all domains)

Molecule: NS5B RNA-DEPENDENT RNA POLYMERASE

3D Structure

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Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_3(4967.1.1.5)

Ligands

in contact, ≤ 4 Å

(2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid23E
3-[(4-chlorophenyl)methoxy]-2-(1-oxo-1,3-dihydro-2H-isoindol-2-yl)benzoic acid7HM

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 5TRI RCSB PDB: 5TRI PDBe: 5TRI UniProt: Q9WMX2

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.