ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5triB2 - ECOD Domain | ECOD

ECOD/Domains/e5triB2

e5triB2

UID: 001924321

PDB

Range: B:1-14,B:37-352
PDB: 5TRI chain B(all domains)
UniProt: Q9WMX2 (all domains)

Molecule: NS5B RNA-DEPENDENT RNA POLYMERASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRdRP_3(304.48.1.15)

Ligands

in contact, ≤ 4 Å

3-[(4-chlorophenyl)methoxy]-2-(1-oxo-1,3-dihydro-2H-isoindol-2-yl)benzoic acid7HM
(2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid23E
within 5 Å only

+ 1 additive (Sulfate ion)

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 5TRI RCSB PDB: 5TRI PDBe: 5TRI UniProt: Q9WMX2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.