ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4knlB1 - ECOD Domain | ECOD

ECOD/Domains/e4knlB1

e4knlB1

UID: 001926598

PDB

Range: B:238-417
PDB: 4KNL chain B(all domains)
UniProt: Q2FZK7 (all domains)
Gene: atl

Molecule: Bifunctional autolysin

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

Oxamic AcidOXM
drugDrugBank DB03940
Sodium ionNA
metal

+ 2 additives (Formic acid, Imidazole)

Formic acidFMT

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 4KNL RCSB PDB: 4KNL PDBe: 4KNL UniProt: Q2FZK7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

ImidazoleIMD

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.