ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4pB1 - ECOD Domain | ECOD

ECOD/Domains/e5d4pB1

e5d4pB1

UID: 001927282

PDB

Range: B:4-107
PDB: 5D4P chain B(all domains)
UniProt: D6CQJ8 (all domains)
Gene: THI_0133

Molecule: Putative Nitrogen regulatory protein P-II GlnB

3D Structure

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Related Domains

Browse other domains in P-II →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupGlnB-like(304.5)

TT-groupGlnB-like(304.5.1)

FFamilyP-II(304.5.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nitrogen regulatory protein P-II

ClanCL0089GlnB-like

External Links

ECOD PDB View: 5D4P RCSB PDB: 5D4P PDBe: 5D4P UniProt: D6CQJ8

Downloads

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