ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5gm8A1 - ECOD Domain | ECOD

ECOD/Domains/e5gm8A1

e5gm8A1

UID: 001927338

PDB

Range: A:1-167
PDB: 5GM8 chain A(all domains)
UniProt: A0A072ZPM2 (all domains)
Gene: trmJ

Molecule: tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ

3D Structure

Loading viewer...

Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

SinefunginSFG
drugDrugBank DB01910

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 5GM8 RCSB PDB: 5GM8 PDBe: 5GM8 UniProt: A0A072ZPM2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure