ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5e41A1 - ECOD Domain | ECOD

ECOD/Domains/e5e41A1

e5e41A1

UID: 001930692

PDB

Range: A:625-748
PDB: 5E41 chain A(all domains)
UniProt: P19821 (all domains)
Gene: polA

Molecule: DNA polymerase I, thermostable

3D Structure

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Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturealpha arrays(a.6)

XX-grouphelical bundle in Bacillus stearothermophilus-like DNA polymerase I(4964)

HH-grouphelical bundle in Bacillus stearothermophilus-like DNA polymerase I(4964.1)

TT-grouphelical bundle in Bacillus stearothermophilus-like DNA polymerase I(4964.1.1)

FFamilyDNA_pol_A(4964.1.1.1)

Ligands

in contact, ≤ 4 Å

2'-deoxy-5-{(1E)-5-[(10-hydroxydecanoyl)amino]pent-1-en-1-yl}uridine 5'-(tetrahydrogen triphosphate)AUL
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 5E41 RCSB PDB: 5E41 PDBe: 5E41 UniProt: P19821

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.