ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f0jB2 - ECOD Domain | ECOD

ECOD/Domains/e5f0jB2

e5f0jB2

UID: 001930749

PDB

Range: B:156-300,B:321-326
PDB: 5F0J chain B(all domains)
UniProt: O75436 (all domains)
Gene: VPS26A

Molecule: Vacuolar protein sorting-associated protein 26A

3D Structure

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Related Domains

Browse other domains in Vps26 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyVps26(11.1.1.60)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

Vacuolar protein sorting-associated protein 26

ClanCL0135Arrestin_N-like

External Links

ECOD PDB View: 5F0J RCSB PDB: 5F0J PDBe: 5F0J UniProt: O75436

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.