ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5kjkA1 - ECOD Domain | ECOD

ECOD/Domains/e5kjkA1

e5kjkA1

UID: 001931097

PDB

Range: A:5-270
PDB: 5KJK chain A(all domains)
UniProt: Q9NRG4 (all domains)
Gene: SMYD2

Molecule: N-lysine methyltransferase SMYD2

3D Structure

Loading viewer...

Related Domains

Browse other domains in SET, zf-MYND →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilySET, zf-MYND(70.3.1.11)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
2-[2-[1-[2-(3,4-dichlorophenyl)ethyl]azetidin-3-yl]oxyphenyl]-~{N}-(3-pyrrolidin-1-ylpropyl)pyridine-4-carboxamide6T1
Zinc ion

Pfam Families

SET domain

ClanCL0489SAF

PF01753zf-MYND

MYND finger

ClanCL0175TRASH

External Links

ECOD PDB View: 5KJK RCSB PDB: 5KJK PDBe: 5KJK UniProt: Q9NRG4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive ((R,R)-2,3-BUTANEDIOL)

(R,R)-2,3-BUTANEDIOLBU3

Shown in the structure viewer. Drug annotations from DrugDomain.